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Export to Zenodo


Currently openBIS offers an integration with the Zenodo data repository (https://zenodo.org/).


This enables data direct data transfer from openBIS to Zenodo. This feature needs to be enabled by a lab manager, who has admin rights for the Settings: https://labnotebook.ch/index.php/docs/admin-documentation/enable-transfer-to-data-repositories/


Create Zenodo Personal Access Token


In order to be able to export data to Zenodo, you need a valid Zenodo account. You also need to create a personal access token. This can be done from the Applications under Settings in Zenodo, as shown below:

Save Zenodo Personal Access Token in openBIS


After creating the personal access token in Zenodo, this needs to be stored in openBIS, with the following procedure:

  1. Go to User Profile under Utilities in the main menu
  2. Enable editing
  3. Add the personal access token from Zenodo
  4. Save

Export data to Zenodo


To export data to Zenodo:

  1. Go to Exports -> Export to Zenodo under Utilities in the main menu
  2. Select the data you want to export from the menu
  3. enter a Submission Title
  4. Click Export Selected on top of the export form
  5. You are now redirected to Zenodo, where you should fill in additional metadata information.